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Sample GSM3855954 Query DataSets for GSM3855954
Status Public on Mar 22, 2020
Title CC223_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: MS
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 50.59283862
11715101_s_at 15.91196215
11715102_x_at 38.8355809
11715103_x_at 65.61316806
11715104_s_at 25.78850751
11715105_at 17.76879024
11715106_x_at 21.46165474
11715107_s_at 25.34343045
11715108_x_at 16.54147981
11715109_at 17.36004853
11715110_at 18.53460189
11715111_s_at 31.81484524
11715112_at 15.37703999
11715113_x_at 20.69825834
11715114_x_at 20.74437891
11715115_s_at 13.69024707
11715116_s_at 147.4546679
11715117_x_at 13.39404812
11715118_s_at 20.24230598
11715119_s_at 25.85330654

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3855954_CC223_100517_A02.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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