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Sample GSM3855946 Query DataSets for GSM3855946
Status Public on Mar 22, 2020
Title CC205_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: MS
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 49.79677416
11715101_s_at 18.84866786
11715102_x_at 50.24600239
11715103_x_at 61.21192529
11715104_s_at 25.50753189
11715105_at 17.51509089
11715106_x_at 22.08130882
11715107_s_at 24.61566798
11715108_x_at 13.95139552
11715109_at 15.93836054
11715110_at 16.77282782
11715111_s_at 33.57454807
11715112_at 16.26995548
11715113_x_at 22.4134424
11715114_x_at 25.50453567
11715115_s_at 12.38826162
11715116_s_at 172.5208919
11715117_x_at 14.61010512
11715118_s_at 24.18266469
11715119_s_at 65.98783056

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3855946_CC205_140317_E04.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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