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Sample GSM3855924 Query DataSets for GSM3855924
Status Public on Mar 22, 2020
Title CC153_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: JH
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 48.88582305
11715101_s_at 17.70742508
11715102_x_at 49.8376051
11715103_x_at 70.86827332
11715104_s_at 43.3552984
11715105_at 16.48536198
11715106_x_at 19.75874029
11715107_s_at 25.09201695
11715108_x_at 15.38527055
11715109_at 18.80246617
11715110_at 28.64092565
11715111_s_at 37.47142677
11715112_at 17.54490584
11715113_x_at 28.38754881
11715114_x_at 23.60363562
11715115_s_at 14.44202863
11715116_s_at 75.05609968
11715117_x_at 14.20356693
11715118_s_at 18.7010926
11715119_s_at 28.87344145

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3855924_CC153_040417_H08.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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