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Sample GSM3855919 Query DataSets for GSM3855919
Status Public on Mar 22, 2020
Title CC141_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: JH
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 50.29849875
11715101_s_at 16.98258376
11715102_x_at 47.4495127
11715103_x_at 73.64167159
11715104_s_at 34.68035406
11715105_at 20.59073416
11715106_x_at 22.86111147
11715107_s_at 22.08573738
11715108_x_at 18.17271064
11715109_at 17.4551773
11715110_at 20.3076098
11715111_s_at 59.09608164
11715112_at 21.28101578
11715113_x_at 22.8219077
11715114_x_at 23.57360259
11715115_s_at 14.70515992
11715116_s_at 63.94253459
11715117_x_at 14.22800699
11715118_s_at 17.6371607
11715119_s_at 48.3590101

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3855919_CC141_040417_F08.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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