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Sample GSM3855916 Query DataSets for GSM3855916
Status Public on Mar 22, 2020
Title CC135_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: JH
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 56.85248152
11715101_s_at 16.97435713
11715102_x_at 34.89303625
11715103_x_at 70.24492555
11715104_s_at 40.48622938
11715105_at 19.83145614
11715106_x_at 26.3405805
11715107_s_at 25.59808221
11715108_x_at 15.52089084
11715109_at 21.17306124
11715110_at 17.79949385
11715111_s_at 48.95827729
11715112_at 18.66411476
11715113_x_at 22.99831766
11715114_x_at 17.57537898
11715115_s_at 13.63598152
11715116_s_at 49.83239524
11715117_x_at 15.38799679
11715118_s_at 16.75885441
11715119_s_at 66.05318024

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3855916_CC135_040417_D08.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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