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Sample GSM382215 Query DataSets for GSM382215
Status Public on Mar 20, 2009
Title Hues 52
Sample type RNA
 
Source name undifferentiated human ES cells
Organism Homo sapiens
Characteristics cell type: undifferentiated human ES cells
development stage: embryonic
Treatment protocol Chen et al., Cell Stem Cell 4, February 6, 2009, pp103-106
Growth protocol Standard human embryonic stem cell media.
Extracted molecule total RNA
Extraction protocol RNAeasy Plus Mini Kit Qiagen
Label biotin
Label protocol according to Illumina protocols
 
Hybridization protocol Hybridization according to Illumina protocols on Illumina humanRef-8 v3 BeadArray
Scan protocol according to Illumina protocols
Description Chip # 4256425034; Array H
Data processing Variance stabilization before normalization using the vst function in the illumina package (http://www.bioconductor.org/packages/bioc/vignettes/lumi/inst/doc/lumi.pdf) Quantile normalization, due to normalization, there is no p value.
 
Submission date Mar 19, 2009
Last update date Mar 19, 2009
Contact name Dieter Egli
E-mail(s) degli@nyscf.org
Phone 617 4968659
Organization name The New York Stem Cell Foundation Research Institute
Department NYSCF
Lab Egli
Street address 3960 Broadway
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL6883
Series (1)
GSE15294 Gene expression of genetically related and unrelated human embryonic stem cell lines

Data table header descriptions
ID_REF
VALUE log2 gene expression levels

Data table
ID_REF VALUE
ILMN_1343291 15.11541392
ILMN_1651209 7.626718631
ILMN_1651228 13.84242945
ILMN_1651229 8.388718504
ILMN_1651235 7.513224284
ILMN_1651236 7.563924849
ILMN_1651237 9.427709303
ILMN_1651238 7.46969156
ILMN_1651254 10.84557264
ILMN_1651260 7.441990291
ILMN_1651262 13.28089074
ILMN_1651268 7.690799858
ILMN_1651278 8.776020534
ILMN_1651282 8.126901746
ILMN_1651285 7.737820089
ILMN_1651286 7.797635274
ILMN_1651292 7.506889592
ILMN_1651303 7.558752833
ILMN_1651309 7.516063349
ILMN_1651315 10.228114

Total number of rows: 24526

Table truncated, full table size 596 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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