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Sample GSM382208 Query DataSets for GSM382208
Status Public on Mar 20, 2009
Title Hues 8
Sample type RNA
 
Source name undifferentiated human ES cells
Organism Homo sapiens
Characteristics cell type: undifferentiated human ES cells
development stage: embryonic
Treatment protocol Chen et al., Cell Stem Cell 4, February 6, 2009, pp103-106
Growth protocol Standard human embryonic stem cell media.
Extracted molecule total RNA
Extraction protocol RNAeasy Plus Mini Kit Qiagen
Label biotin
Label protocol according to Illumina protocols
 
Hybridization protocol Hybridization according to Illumina protocols on Illumina humanRef-8 v3 BeadArray
Scan protocol according to Illumina protocols
Description Chip # 4256425034; Array A
Data processing Variance stabilization before normalization using the vst function in the illumina package (http://www.bioconductor.org/packages/bioc/vignettes/lumi/inst/doc/lumi.pdf) Quantile normalization, due to normalization, there is no p value.
 
Submission date Mar 19, 2009
Last update date Mar 19, 2009
Contact name Dieter Egli
E-mail(s) degli@nyscf.org
Phone 617 4968659
Organization name The New York Stem Cell Foundation Research Institute
Department NYSCF
Lab Egli
Street address 3960 Broadway
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL6883
Series (1)
GSE15294 Gene expression of genetically related and unrelated human embryonic stem cell lines

Data table header descriptions
ID_REF
VALUE log2 gene expression levels

Data table
ID_REF VALUE
ILMN_1343291 15.11541392
ILMN_1651209 7.724225873
ILMN_1651228 13.77333719
ILMN_1651229 8.836249117
ILMN_1651235 7.478704774
ILMN_1651236 7.54837709
ILMN_1651237 9.537468966
ILMN_1651238 7.482200634
ILMN_1651254 11.13069104
ILMN_1651260 7.431137921
ILMN_1651262 13.4984064
ILMN_1651268 7.699980881
ILMN_1651278 8.519278614
ILMN_1651282 7.835648535
ILMN_1651285 7.836341761
ILMN_1651286 7.820361655
ILMN_1651292 7.57694342
ILMN_1651303 7.498514019
ILMN_1651309 7.467325099
ILMN_1651315 10.25588903

Total number of rows: 24526

Table truncated, full table size 596 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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