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Sample GSM38107 Query DataSets for GSM38107
Status Public on Jan 15, 2005
Title Colon - 8266
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 17
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1003.8 P 0.000662
AFFX-BioB-M_at 1399.5 P 0.000044
AFFX-BioB-3_at 693.3 P 0.000095
AFFX-BioC-5_at 2345.8 P 0.000052
AFFX-BioC-3_at 2906.2 P 0.000044
AFFX-BioDn-5_at 6136.1 P 0.000044
AFFX-BioDn-3_at 11005.4 P 0.000052
AFFX-CreX-5_at 27835 P 0.000052
AFFX-CreX-3_at 34970.2 P 0.000044
AFFX-DapX-5_at 972.7 P 0.000052
AFFX-DapX-M_at 1869.4 P 0.000581
AFFX-DapX-3_at 2390.5 P 0.000044
AFFX-LysX-5_at 186.4 P 0.000258
AFFX-LysX-M_at 284.1 P 0.021902
AFFX-LysX-3_at 461.3 P 0.000127
AFFX-PheX-5_at 160.9 P 0.000258
AFFX-PheX-M_at 165.7 P 0.001102
AFFX-PheX-3_at 354.5 P 0.000972
AFFX-ThrX-5_at 308.6 P 0.000147
AFFX-ThrX-M_at 403.7 P 0.000662

Total number of rows: 54675

Table truncated, full table size 1449 Kbytes.




Supplementary file Size Download File type/resource
GSM38107.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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