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Sample GSM38106 Query DataSets for GSM38106
Status Public on Jan 15, 2005
Title Breast - 8264
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.2
Patient Age: 40-50
Gender: Female
Ethnic Background: American Indian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 43
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: Yes
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 6-10
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 715.9 P 0.000581
AFFX-BioB-M_at 872 P 0.000044
AFFX-BioB-3_at 485.3 P 0.00006
AFFX-BioC-5_at 1747.4 P 0.000044
AFFX-BioC-3_at 2267.5 P 0.000044
AFFX-BioDn-5_at 4242.5 P 0.000044
AFFX-BioDn-3_at 7675.5 P 0.000044
AFFX-CreX-5_at 19884.1 P 0.000052
AFFX-CreX-3_at 24766.1 P 0.000044
AFFX-DapX-5_at 867.6 P 0.000044
AFFX-DapX-M_at 2084.6 P 0.000446
AFFX-DapX-3_at 3105.3 P 0.000044
AFFX-LysX-5_at 137.5 P 0.001794
AFFX-LysX-M_at 268 P 0.004017
AFFX-LysX-3_at 465 P 0.000081
AFFX-PheX-5_at 201 P 0.000127
AFFX-PheX-M_at 309.2 P 0.000195
AFFX-PheX-3_at 332.1 P 0.00039
AFFX-ThrX-5_at 226.4 P 0.00006
AFFX-ThrX-M_at 417.6 P 0.000044

Total number of rows: 54675

Table truncated, full table size 1445 Kbytes.




Supplementary file Size Download File type/resource
GSM38106.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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