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Sample GSM38100 Query DataSets for GSM38100
Status Public on Jan 15, 2005
Title Lung - 8250
Sample type RNA
 
Source name Lung
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Cigars
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 24
Presenting Symptoms: Persistent Cough
Presenting Symptoms: SOB
Workplace or household smokers?: Yes
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1A
Pathological Grade: 2
Primary Site: Lung
Histology: Squamous cell carcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE60486
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 844.3 P 0.000297
AFFX-BioB-M_at 1166.6 P 0.000044
AFFX-BioB-3_at 517.8 P 0.000044
AFFX-BioC-5_at 2042.7 P 0.000052
AFFX-BioC-3_at 2505.2 P 0.000044
AFFX-BioDn-5_at 5206.8 P 0.000044
AFFX-BioDn-3_at 8176.2 P 0.000052
AFFX-CreX-5_at 24619.9 P 0.000044
AFFX-CreX-3_at 29695.9 P 0.000052
AFFX-DapX-5_at 1460.3 P 0.000044
AFFX-DapX-M_at 2875.4 P 0.000147
AFFX-DapX-3_at 3811 P 0.000044
AFFX-LysX-5_at 249 P 0.000297
AFFX-LysX-M_at 338 P 0.002275
AFFX-LysX-3_at 562.1 P 0.00011
AFFX-PheX-5_at 282.7 P 0.000195
AFFX-PheX-M_at 480.2 P 0.000147
AFFX-PheX-3_at 562.3 P 0.000225
AFFX-ThrX-5_at 381 P 0.00011
AFFX-ThrX-M_at 674.9 P 0.00006

Total number of rows: 54675

Table truncated, full table size 1447 Kbytes.




Supplementary file Size Download File type/resource
GSM38100.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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