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Sample GSM38096 Query DataSets for GSM38096
Status Public on Jan 15, 2005
Title Rectum - 8242
Sample type RNA
 
Source name Rectum
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.6
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 119
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Barium enema
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Stage During or Following Multimodality Therapy: Yes
Pathological Dukes Stage: B
Primary Site: Rectum
Histology: Adenocarcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 828.2 P 0.00034
AFFX-BioB-M_at 1102.1 P 0.000044
AFFX-BioB-3_at 516.5 P 0.000044
AFFX-BioC-5_at 2318.7 P 0.000052
AFFX-BioC-3_at 2611.5 P 0.000044
AFFX-BioDn-5_at 5388.9 P 0.000044
AFFX-BioDn-3_at 9886.8 P 0.000052
AFFX-CreX-5_at 25507.5 P 0.000052
AFFX-CreX-3_at 30224.1 P 0.000052
AFFX-DapX-5_at 919.3 P 0.000052
AFFX-DapX-M_at 2045.5 P 0.000581
AFFX-DapX-3_at 2883.7 P 0.000044
AFFX-LysX-5_at 170.9 P 0.00039
AFFX-LysX-M_at 226.9 P 0.004998
AFFX-LysX-3_at 579.3 P 0.000127
AFFX-PheX-5_at 221.7 P 0.000147
AFFX-PheX-M_at 358.2 P 0.000169
AFFX-PheX-3_at 498.9 P 0.00141
AFFX-ThrX-5_at 306.4 P 0.001248
AFFX-ThrX-M_at 392.4 P 0.00011

Total number of rows: 54675

Table truncated, full table size 1447 Kbytes.




Supplementary file Size Download File type/resource
GSM38096.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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