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Sample GSM38092 Query DataSets for GSM38092
Status Public on Jan 15, 2005
Title Breast - 8234
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 24
Mammogram: Yes
Number of years in which a mammogram was obtained?: 16-20
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 26-30
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Pathological T: 3
Pathological N: 3a
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Lobular Carcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE31519
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 627.7 P 0.000509
AFFX-BioB-M_at 844.9 P 0.000052
AFFX-BioB-3_at 450.5 P 0.00006
AFFX-BioC-5_at 1663 P 0.000052
AFFX-BioC-3_at 2318.8 P 0.000052
AFFX-BioDn-5_at 3664.4 P 0.000044
AFFX-BioDn-3_at 7066 P 0.000052
AFFX-CreX-5_at 18710.3 P 0.000052
AFFX-CreX-3_at 24602.7 P 0.000044
AFFX-DapX-5_at 1687.7 P 0.00006
AFFX-DapX-M_at 3236 P 0.000127
AFFX-DapX-3_at 4359.2 P 0.000044
AFFX-LysX-5_at 223 P 0.000052
AFFX-LysX-M_at 367.4 P 0.00039
AFFX-LysX-3_at 543.9 P 0.000044
AFFX-PheX-5_at 322.8 P 0.000044
AFFX-PheX-M_at 480.3 P 0.00007
AFFX-PheX-3_at 541 P 0.000095
AFFX-ThrX-5_at 521.6 P 0.00011
AFFX-ThrX-M_at 861.5 P 0.000044

Total number of rows: 54675

Table truncated, full table size 1442 Kbytes.




Supplementary file Size Download File type/resource
GSM38092.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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