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GEO accession:
Sample GSM38089
Query DataSets for GSM38089
Status
Public on Jan 15, 2005
Title
Colon - 8228
Sample type
RNA
Source name
Colon
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 21
Presenting Symptoms: Abdominal Pain
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 4
Pathological N: 2
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Colon
Histology: Adenocarcinoma
Submission date
Dec 23, 2004
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
557.3
P
0.000662
AFFX-BioB-M_at
769.4
P
0.00007
AFFX-BioB-3_at
467.4
P
0.000169
AFFX-BioC-5_at
1368.5
P
0.000052
AFFX-BioC-3_at
1885.8
P
0.00006
AFFX-BioDn-5_at
3363.8
P
0.000044
AFFX-BioDn-3_at
6752.3
P
0.00007
AFFX-CreX-5_at
17277.5
P
0.000052
AFFX-CreX-3_at
20747.7
P
0.000044
AFFX-DapX-5_at
237.7
P
0.000095
AFFX-DapX-M_at
617.5
P
0.002023
AFFX-DapX-3_at
908.9
P
0.000081
AFFX-LysX-5_at
61.4
P
0.011384
AFFX-LysX-M_at
127.7
M
0.050229
AFFX-LysX-3_at
188.6
P
0.00011
AFFX-PheX-5_at
49.4
P
0.003212
AFFX-PheX-M_at
99.6
P
0.004017
AFFX-PheX-3_at
179.4
P
0.039661
AFFX-ThrX-5_at
84.1
P
0.028457
AFFX-ThrX-M_at
134.6
P
0.00844
Total number of rows:
54675
Table truncated, full table size
1444 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM38089.CEL.gz
8.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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