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Sample GSM38079 Query DataSets for GSM38079
Status Public on Jan 15, 2005
Title Prostate - 8206
Sample type RNA
 
Source name Prostate
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.7
Patient Age: 50-60
Gender: Male
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
PSA: Elevated
# of years PSA Tested?: 11-15
Cancer discovered by digital exam?: Yes
Pathological T: 2b
Pathological N: 0
Pathological M: 0
Pathological Stage: 2
Pathological Grade: 2
Pathological Gleason Score: 5-6
Primary Site: Prostate
Histology: Adenocarcinoma, NOS
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1397.5 P 0.000581
AFFX-BioB-M_at 1881.8 P 0.000044
AFFX-BioB-3_at 1042.8 P 0.000127
AFFX-BioC-5_at 3646.7 P 0.000052
AFFX-BioC-3_at 3756.1 P 0.000052
AFFX-BioDn-5_at 8940.2 P 0.000044
AFFX-BioDn-3_at 14910.2 P 0.000044
AFFX-CreX-5_at 38471 P 0.000044
AFFX-CreX-3_at 46915 P 0.000044
AFFX-DapX-5_at 1043.1 P 0.00007
AFFX-DapX-M_at 1908.2 P 0.000754
AFFX-DapX-3_at 2689.5 P 0.000044
AFFX-LysX-5_at 147.3 P 0.046482
AFFX-LysX-M_at 192.7 A 0.262827
AFFX-LysX-3_at 422 P 0.000169
AFFX-PheX-5_at 271.8 P 0.004017
AFFX-PheX-M_at 311.4 P 0.002275
AFFX-PheX-3_at 365.5 P 0.005565
AFFX-ThrX-5_at 397.6 P 0.000258
AFFX-ThrX-M_at 345.5 P 0.000754

Total number of rows: 54675

Table truncated, full table size 1451 Kbytes.




Supplementary file Size Download File type/resource
GSM38079.CEL.gz 7.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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