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Sample GSM38062 Query DataSets for GSM38062
Status Public on Jan 15, 2005
Title Breast - 3377
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 36
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 16-20
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Pathological ER: Positive
Pathological PR: Negative
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 831.5 P 0.000581
AFFX-BioB-M_at 1182.2 P 0.000044
AFFX-BioB-3_at 731.2 P 0.000044
AFFX-BioC-5_at 2166.9 P 0.000052
AFFX-BioC-3_at 3027.5 P 0.000044
AFFX-BioDn-5_at 5600.7 P 0.000044
AFFX-BioDn-3_at 9914.2 P 0.000044
AFFX-CreX-5_at 26751.8 P 0.000052
AFFX-CreX-3_at 33742.4 P 0.000044
AFFX-DapX-5_at 1164.1 P 0.000052
AFFX-DapX-M_at 2143.7 P 0.000581
AFFX-DapX-3_at 2728.3 P 0.000052
AFFX-LysX-5_at 168.9 P 0.000297
AFFX-LysX-M_at 260.4 P 0.004484
AFFX-LysX-3_at 490.9 P 0.000225
AFFX-PheX-5_at 199.9 P 0.000044
AFFX-PheX-M_at 353.5 P 0.000147
AFFX-PheX-3_at 298 P 0.000095
AFFX-ThrX-5_at 424.4 P 0.000052
AFFX-ThrX-M_at 615.5 P 0.000044

Total number of rows: 54675

Table truncated, full table size 1445 Kbytes.




Supplementary file Size Download File type/resource
GSM38062.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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