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Sample GSM38061 Query DataSets for GSM38061
Status Public on Jan 15, 2005
Title Colon - 2485
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 12
Presenting Symptoms: Bright red stools
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Primary Site: Colon
Histology: Adenocarcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1087.2 P 0.000258
AFFX-BioB-M_at 1591.6 P 0.000044
AFFX-BioB-3_at 864.4 P 0.00006
AFFX-BioC-5_at 3170.7 P 0.000044
AFFX-BioC-3_at 4681.4 P 0.000044
AFFX-BioDn-5_at 7813.3 P 0.000044
AFFX-BioDn-3_at 14377.2 P 0.000044
AFFX-CreX-5_at 28222.6 P 0.000044
AFFX-CreX-3_at 34526.2 P 0.000044
AFFX-DapX-5_at 1466.7 P 0.000052
AFFX-DapX-M_at 2725.1 P 0.00034
AFFX-DapX-3_at 3862.5 P 0.000044
AFFX-LysX-5_at 209.5 P 0.000225
AFFX-LysX-M_at 324.1 P 0.000662
AFFX-LysX-3_at 586.1 P 0.000081
AFFX-PheX-5_at 387.1 P 0.00007
AFFX-PheX-M_at 444.5 P 0.00007
AFFX-PheX-3_at 454.4 P 0.000195
AFFX-ThrX-5_at 416 P 0.00011
AFFX-ThrX-M_at 695.3 P 0.00006

Total number of rows: 54675

Table truncated, full table size 1446 Kbytes.




Supplementary file Size Download File type/resource
GSM38061.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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