NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM38057 Query DataSets for GSM38057
Status Public on Jan 15, 2005
Title Breast - 2477
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Female
Ethnic Background: Hispanic
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 43
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 0-5
Pathological T: 2
Pathological N: 0(i-)
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1153.7 P 0.000225
AFFX-BioB-M_at 1508.8 P 0.000044
AFFX-BioB-3_at 798.6 P 0.00007
AFFX-BioC-5_at 2956.1 P 0.000044
AFFX-BioC-3_at 4453.8 P 0.000044
AFFX-BioDn-5_at 8030.5 P 0.000044
AFFX-BioDn-3_at 14523 P 0.000044
AFFX-CreX-5_at 27222.1 P 0.000052
AFFX-CreX-3_at 31739.4 P 0.000044
AFFX-DapX-5_at 1189.5 P 0.000052
AFFX-DapX-M_at 2352.1 P 0.000446
AFFX-DapX-3_at 2810.5 P 0.000052
AFFX-LysX-5_at 188 P 0.003212
AFFX-LysX-M_at 297.9 P 0.004017
AFFX-LysX-3_at 493.8 P 0.000052
AFFX-PheX-5_at 239.5 P 0.000044
AFFX-PheX-M_at 362.2 P 0.000081
AFFX-PheX-3_at 402.8 P 0.000258
AFFX-ThrX-5_at 443.5 P 0.000081
AFFX-ThrX-M_at 623.3 P 0.00007

Total number of rows: 54675

Table truncated, full table size 1445 Kbytes.




Supplementary file Size Download File type/resource
GSM38057.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap