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GEO accession:
Sample GSM38055
Query DataSets for GSM38055
Status
Public on Jan 15, 2005
Title
Colon - 2471
Sample type
RNA
Source name
Colon
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 13
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Presenting Symptoms: Diarrhea
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: X
Pathological Multiple Tumors: No
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma
Submission date
Dec 23, 2004
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
739.4
P
0.000446
AFFX-BioB-M_at
873.5
P
0.000044
AFFX-BioB-3_at
628
P
0.00006
AFFX-BioC-5_at
1890.9
P
0.000052
AFFX-BioC-3_at
2536.1
P
0.000044
AFFX-BioDn-5_at
4998.5
P
0.000044
AFFX-BioDn-3_at
10838.7
P
0.00007
AFFX-CreX-5_at
23483.5
P
0.000052
AFFX-CreX-3_at
31415.9
P
0.000044
AFFX-DapX-5_at
1153.7
P
0.000044
AFFX-DapX-M_at
2555.5
P
0.00034
AFFX-DapX-3_at
2820.9
P
0.000044
AFFX-LysX-5_at
231.9
P
0.000258
AFFX-LysX-M_at
224.5
P
0.00844
AFFX-LysX-3_at
530.5
P
0.00006
AFFX-PheX-5_at
260.8
P
0.00007
AFFX-PheX-M_at
316.9
P
0.000195
AFFX-PheX-3_at
287.1
P
0.00034
AFFX-ThrX-5_at
367.6
P
0.000195
AFFX-ThrX-M_at
525.9
P
0.000044
Total number of rows:
54675
Table truncated, full table size
1445 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM38055.CEL.gz
8.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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