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Sample GSM38051 Query DataSets for GSM38051
Status Public on Jan 15, 2005
Title Breast - 13491
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.7
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Type of Tobacco Use: Chewing Tobacco
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 8
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Pathological T: 4b
Pathological N: 2a
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 757.7 P 0.00039
AFFX-BioB-M_at 933.7 P 0.000095
AFFX-BioB-3_at 525.6 P 0.000095
AFFX-BioC-5_at 1999.5 P 0.000044
AFFX-BioC-3_at 2339.5 P 0.000044
AFFX-BioDn-5_at 4321.3 P 0.000044
AFFX-BioDn-3_at 9229.4 P 0.00007
AFFX-CreX-5_at 21949.9 P 0.000044
AFFX-CreX-3_at 26022.8 P 0.000044
AFFX-DapX-5_at 1171.1 P 0.00006
AFFX-DapX-M_at 2261.1 P 0.000446
AFFX-DapX-3_at 2962.2 P 0.000052
AFFX-LysX-5_at 153.1 P 0.000972
AFFX-LysX-M_at 286.6 P 0.003595
AFFX-LysX-3_at 438.1 P 0.00007
AFFX-PheX-5_at 218.6 P 0.000509
AFFX-PheX-M_at 319.1 P 0.000297
AFFX-PheX-3_at 374.5 P 0.00034
AFFX-ThrX-5_at 431.7 P 0.000044
AFFX-ThrX-M_at 677.4 P 0.00007

Total number of rows: 54675

Table truncated, full table size 1446 Kbytes.




Supplementary file Size Download File type/resource
GSM38051.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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