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Sample GSM378989 Query DataSets for GSM378989
Status Public on Mar 11, 2009
Title Low Early-Life SES Subject # 792
Sample type RNA
 
Source name PBMC
Organism Homo sapiens
Characteristics socio-economic status: Low Early-Life SES
cell type: PBMC
Treatment protocol Leukocytes were collected by antecubtial venipuncture and PBMC were then isolated by density-gradient centrifugation
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol PBMC were then homogenized in QiaShredder Spin Columns (Qiagen) and the lysates were frozen at -80° C until RNA was extracted using AllPrep DNA/RNA kits (Qiagen; Mississauga, ON).
Label biotin
Label protocol Used the Illumina TotalPrep RNA Amplification Kit following manufacturer's instructions
 
Hybridization protocol RNA was hybridized to Illumina HumanRef-8 v3.0 Expression Beadchips following manufacturer's instructions
Scan protocol Chips were scanned on an Illumina Beadstation 500 at the McGill University and Génome Québec Innovation Centre.
Description N/A
Data processing None - these are raw hybridization intensities, averaged across the 30 bead replicates, provided by Illumina Beadstudio
 
Submission date Mar 10, 2009
Last update date Mar 10, 2009
Contact name Gregory E Miller
E-mail(s) gemiller@psych.ubc.ca
Organization name UBC
Department Psychology
Street address 2136 W Mall
City Vancouver
State/province BC
ZIP/Postal code V6L1M4
Country Canada
 
Platform ID GPL6883
Series (1)
GSE15180 The Biological Residue of Low Early-Life Social Class

Data table header descriptions
ID_REF
VALUE raw average hybridization intensity

Data table
ID_REF VALUE
ILMN_2058782 99.30665
ILMN_2084825 520.0961
ILMN_1796678 495.6367
ILMN_1769388 106.3339
ILMN_1723035 177.2116
ILMN_2150856 651.387
ILMN_1658483 80.17213
ILMN_1720048 73.12347
ILMN_1708323 101.6679
ILMN_1687978 252.9959
ILMN_2159694 1445.439
ILMN_1657234 130.6675
ILMN_2353161 63.98751
ILMN_1686116 616.8351
ILMN_2165289 1844.35
ILMN_1776967 105.7064
ILMN_2193213 3142.739
ILMN_2129572 65.25215
ILMN_2102721 1479.341
ILMN_2120022 145.1262

Total number of rows: 16830

Table truncated, full table size 359 Kbytes.




Supplementary data files not provided
Processed data not applicable for this record

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