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Sample GSM3767570 Query DataSets for GSM3767570
Status Public on Feb 26, 2020
Title miR-200 Control 1 - Vehicle
Sample type SRA
Source name Keratinocytes
Organism Mus musculus
Characteristics agent: Vehicle
cell type: Keratinocytes
Treatment protocol Treated with vehicle or 3 ug/ml doxycycline
Extracted molecule total RNA
Extraction protocol RNA extracted with Trizol
Poly A selected and then NEB Next Ultra Directional kit
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 4000
Description HM_C3_Control1
MiSeq and HiSeq 4000
Data processing Aligned with Bowtie2
Genes counted with Htseq against mm10
For miR-200 samples the Hiseq and Miseq counts were combined
Htseq was loaded into DESeq2 for differential analysis using the default settings
Genome_build: mm10
Supplementary_files_format_and_content: Htseq count files and DESeq output for each experiment
Submission date May 14, 2019
Last update date Feb 26, 2020
Contact name Glen Bjerke
Organization name University of Colorado
Department MCDB
Lab Yi Lab
Street address 347 UCB
City Boulder
State/province CO
ZIP/Postal code 80301
Country USA
Platform ID GPL21103
Series (1)
GSE131205 RNA-seq on miRNA induced mouse keratinocytes. miR-200b cluster and miR-205.
BioSample SAMN11642376
SRA SRX5830667

Supplementary file Size Download File type/resource
GSM3767570_HM_C3_Control1.htcount.txt.gz 91.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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