|
| Status |
Public on Apr 25, 2019 |
| Title |
shNS_241 |
| Sample type |
SRA |
| |
|
| Source name |
murine BCR-ABL1+/Arf null lymphoblastic leukemia
|
| Organism |
Mus musculus |
| Characteristics |
shRNA: non-silencing shRNA
time point: sorted from recipient mouse at Day 7
tissue: lymphoblastic leukemia
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol
Illumina
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
RNA-seq shNS v shCn - all - counts only
|
| Data processing |
Bowtie for alignment to GRCm38
RPKM normalization
Genome_build: GRCm38
Supplementary_files_format_and_content: text file with cuffllinks output
|
| |
|
| Submission date |
Apr 24, 2019 |
| Last update date |
Apr 25, 2019 |
| Contact name |
Christopher Porter |
| E-mail(s) |
chris.porter@emory.edu
|
| Organization name |
Emory University
|
| Department |
Pediatrics
|
| Street address |
1760 Haygood Drive
|
| City |
Atlanta |
| State/province |
GA |
| ZIP/Postal code |
30322 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (1) |
| GSE130272 |
IL-12 abrogates calcineurin-dependent immune evasion during leukemia progression |
|
| Relations |
| BioSample |
SAMN11491404 |
| SRA |
SRX5730509 |
