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Sample GSM368885 Query DataSets for GSM368885
Status Public on Jul 06, 2012
Title DTCs (bone marrow aspirates) from Patient 8 (4424556027_B)
Sample type RNA
 
Source name DTCs (bone marrow aspirates) from Patient 8
Organism Homo sapiens
Characteristics cell type: disseminated tumour cells
disease: breast cancer
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Qiagen (Germantown, MD) AllPrep DNA/RNA/Protein extraction kits
Label biotin
Label protocol Illumina's protocol
 
Hybridization protocol Illumina's protocol
Scan protocol Illumina's protocol
Description n/a
Data processing Image data were processed by BeadStudio software using background subtraction and Quantile normalization. The methods to adjust the normalized intensity values see MAQC Consortium’s description [PMID: 16964229]. Log2 expression ratio of an intensity value to the average signal in all samples for each transcript was calculated.
 
Submission date Feb 10, 2009
Last update date Jul 06, 2012
Contact name Dong-Yu Wang
Organization name UHN-PMH-OCI
Street address 610 University Ave
City Toronto
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL6883
Series (1)
GSE14776 Mechanisms and pathways of bone metastasis: challenges and pitfalls of performing molecular research on patient samples

Data table header descriptions
ID_REF
VALUE Image data were processed by BeadStudio software using background subtraction and Quantile normalization. The methods to adjust the normalized intensity values see MAQC Consortium’s description [PMID: 16964229]. Log2 expression ratio of an intensity value to the average signal in all samples for each transcript was calculated.

Data table
ID_REF VALUE
ILMN_1343291 -0.144268649
ILMN_1651209 -2.415947298
ILMN_1651228 -0.11612103
ILMN_1651229 -0.296111722
ILMN_1651235 0
ILMN_1651236 -1.112735917
ILMN_1651237 0.406718632
ILMN_1651238 0
ILMN_1651254 -2.696061263
ILMN_1651260 0
ILMN_1651262 0.810619975
ILMN_1651268 0.158265761
ILMN_1651278 0.347337674
ILMN_1651282 0.636258535
ILMN_1651285 0.169172003
ILMN_1651286 -0.766619346
ILMN_1651292 0.161502375
ILMN_1651303 0
ILMN_1651309 0
ILMN_1651315 -1.058923483

Total number of rows: 24526

Table truncated, full table size 559 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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