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Sample GSM368881 Query DataSets for GSM368881
Status Public on Jul 06, 2012
Title MTCs (Computed Tomography) from Patient 3 (4424556026_E)
Sample type RNA
 
Source name MTCs (Computed Tomography) from Patient 3
Organism Homo sapiens
Characteristics cell type: metastatic tumour cells
disease: breast cancer
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Qiagen (Germantown, MD) AllPrep DNA/RNA/Protein extraction kits
Label biotin
Label protocol Illumina's protocol
 
Hybridization protocol Illumina's protocol
Scan protocol Illumina's protocol
Description n/a
Data processing Image data were processed by BeadStudio software using background subtraction and Quantile normalization. The methods to adjust the normalized intensity values see MAQC Consortium’s description [PMID: 16964229]. Log2 expression ratio of an intensity value to the average signal in all samples for each transcript was calculated.
 
Submission date Feb 10, 2009
Last update date Jul 06, 2012
Contact name Dong-Yu Wang
Organization name UHN-PMH-OCI
Street address 610 University Ave
City Toronto
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL6883
Series (1)
GSE14776 Mechanisms and pathways of bone metastasis: challenges and pitfalls of performing molecular research on patient samples

Data table header descriptions
ID_REF
VALUE Image data were processed by BeadStudio software using background subtraction and Quantile normalization. The methods to adjust the normalized intensity values see MAQC Consortium’s description [PMID: 16964229]. Log2 expression ratio of an intensity value to the average signal in all samples for each transcript was calculated.

Data table
ID_REF VALUE
ILMN_1343291 -0.29536331
ILMN_1651209 -2.765551071
ILMN_1651228 -0.056004876
ILMN_1651229 -6.066964053
ILMN_1651235 0.633888011
ILMN_1651236 1.008147467
ILMN_1651237 -1.952294097
ILMN_1651238 0.204110191
ILMN_1651254 -7.145330438
ILMN_1651260 0
ILMN_1651262 -1.765611508
ILMN_1651268 -0.790621861
ILMN_1651278 -5.097937123
ILMN_1651282 -4.136229911
ILMN_1651285 -1.861605469
ILMN_1651286 -1.222437906
ILMN_1651292 0
ILMN_1651303 0.3696947
ILMN_1651309 0
ILMN_1651315 0.43742191

Total number of rows: 24526

Table truncated, full table size 574 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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