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Sample GSM368880 Query DataSets for GSM368880
Status Public on Jul 06, 2012
Title DTCs (bone marrow aspirates) from Patient 6 (4424556026_D)
Sample type RNA
 
Source name DTCs (bone marrow aspirates) from Patient 6
Organism Homo sapiens
Characteristics cell type: disseminated tumour cells
disease: breast cancer
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Qiagen (Germantown, MD) AllPrep DNA/RNA/Protein extraction kits
Label biotin
Label protocol Illumina's protocol
 
Hybridization protocol Illumina's protocol
Scan protocol Illumina's protocol
Description n/a
Data processing Image data were processed by BeadStudio software using background subtraction and Quantile normalization. The methods to adjust the normalized intensity values see MAQC Consortium’s description [PMID: 16964229]. Log2 expression ratio of an intensity value to the average signal in all samples for each transcript was calculated.
 
Submission date Feb 10, 2009
Last update date Jul 06, 2012
Contact name Dong-Yu Wang
Organization name UHN-PMH-OCI
Street address 610 University Ave
City Toronto
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL6883
Series (1)
GSE14776 Mechanisms and pathways of bone metastasis: challenges and pitfalls of performing molecular research on patient samples

Data table header descriptions
ID_REF
VALUE Image data were processed by BeadStudio software using background subtraction and Quantile normalization. The methods to adjust the normalized intensity values see MAQC Consortium’s description [PMID: 16964229]. Log2 expression ratio of an intensity value to the average signal in all samples for each transcript was calculated.

Data table
ID_REF VALUE
ILMN_1343291 -0.118313806
ILMN_1651209 -2.765551071
ILMN_1651228 0.020940921
ILMN_1651229 -0.241119766
ILMN_1651235 0
ILMN_1651236 -1.155450578
ILMN_1651237 1.155991276
ILMN_1651238 0
ILMN_1651254 -3.645603319
ILMN_1651260 0
ILMN_1651262 0.507923375
ILMN_1651268 1.071515419
ILMN_1651278 0.588507201
ILMN_1651282 0.421741086
ILMN_1651285 0.448307015
ILMN_1651286 0.462937597
ILMN_1651292 0
ILMN_1651303 1.525907564
ILMN_1651309 0
ILMN_1651315 -0.944874255

Total number of rows: 24526

Table truncated, full table size 560 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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