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Sample GSM3680 Query DataSets for GSM3680
Status Public on Jun 14, 2003
Title Skin graft draining nodes
Sample type SAGE
Anchor NlaIII
Tag Count 11235
Tag Length 10
 
Source name Lymph nodes draining skin graft
Organism Mus musculus
Extracted molecule total RNA
 
Description Draining lymph nodes taken on day 7 from male skin grafted anti-HY TCR transgenic female A1xRAG-1-/- mice. mRNA was derived from total lymph node pool.
Keywords = CD4, T cell, graft rejection, lymph node
 
Submission date Jan 15, 2003
Last update date Nov 19, 2008
Contact name Steve Cobbold
E-mail(s) stephen.cobbold@path.ox.ac.uk
Phone +44-(0)1865-275504
Fax +44-(0)1865-275501
URL http://www.molbiol.ox.ac.uk/pathology/tig/welcome.html
Organization name University of Oxford
Department Sir William Dunn School of Pathology
Lab Therapeutic Immunology Group
Street address South Parks Road
City Oxford
State/province Oxfordshire
ZIP/Postal code OX1 3RE
Country United Kingdom
 
Platform ID GPL11
Series (2)
GSE205 Mouse T helper cell clones
GSE1316 IL-10-conditioned dendritic cells elicit innate inflammatory gene products in response to danger signals

Data table header descriptions
TAG 10 base pair SAGE Tag
COUNT Absolute count of each Tag in library
TPM tags per million

Data table
TAG COUNT TPM
TCAGAGTGAG 160 14241.21
GTGGCTCACA 96 8544.73
GTTCAAGTGA 78 6942.59
TTGGTGAAGG 61 5429.46
CCCTGGGTTC 52 4628.39
GATACTTGGA 50 4450.38
CCCTTCTTCT 46 4094.35
AGGCAGACAG 38 3382.29
CTAATATTTG 38 3382.29
TGGATCCTGA 38 3382.29
GTGACCACGG 37 3293.28
GCTGCCCTCC 36 3204.27
AACTGAGGGG 33 2937.25
GATTGAGAAT 32 2848.24
GCCAAGTGGA 27 2403.20
GCGCCCTTCC 27 2403.20
GGCTTCGGTC 27 2403.20
AAGGTGGAAG 26 2314.20
ATCCGAAAGA 26 2314.20
GAAGAAGTGG 26 2314.20

Total number of rows: 7526

Table truncated, full table size 140 Kbytes.




Supplementary data files not provided

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