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Sample GSM359314 Query DataSets for GSM359314
Status Public on Dec 01, 2009
Title H3K9me3 Yaswen3C RenLab ENCODE PCR tiling array replicate 1 llee_enc_105_H3K9me3_3C_060408.gpr
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from Yaswen3C cells using H3K9me3 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from Yaswen3C cells using H3K9me3 antibody
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from Yaswen3C cells
Organism Homo sapiens
Characteristics Input DNA from Yaswen3C cells
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol GenePix
Scan protocol GenePix
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Jan 09, 2009
Last update date Feb 19, 2009
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE14436 P16INK4a mediated supperssion of telomerase in normal and malignant human breast cells

Data table header descriptions
ID_REF ID_REF
VALUE log2 ratio (F635/F532) with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -0.210 0.91 6.908e-01 1436.00 1585.19 1492 1502 587 56 61 43 1819 1803 617 158 164 70 0 -0.210
2 -0.181 0.92 6.567e-01 1505.00 1628.13 1562 1585 495 57 61 44 1867 1847 517 161 165 69 0 -0.181
3 1.415 1.05 4.795e-01 10.00 9.54 52 60 41 60 61 43 145 155 67 148 154 69 0 1.415
4 1.05 4.808e-01 10.00 9.54 58 63 43 56 59 42 156 160 72 159 161 69 -50 0
5 -0.133 0.96 5.864e-01 1850.00 1936.39 1907 2030 981 57 58 41 2185 2328 1221 156 159 69 0 -0.133
6 0.117 1.14 2.547e-01 3457.00 3042.49 3516 3517 911 59 61 42 3346 3272 905 158 161 70 0 0.117
7 0.054 1.09 3.331e-01 3549.00 3261.99 3605 3404 1230 56 60 42 3570 3438 1053 152 156 70 0 0.054
8 -0.316 0.84 8.117e-01 1305.00 1550.83 1362 1401 396 57 59 40 1778 1819 480 153 156 71 0 -0.316
9 -0.165 0.93 6.365e-01 1965.00 2102.45 2022 1959 614 57 59 41 2362 2338 574 159 164 70 0 -0.165
10 0.043 1.08 3.445e-01 3103.00 2874.52 3159 3131 618 56 60 42 3169 3128 642 157 164 84 0 0.043
11 1.05 4.802e-01 10.00 9.54 53 57 41 56 59 41 160 159 70 155 161 70 -50 0
12 -0.303 0.85 7.954e-01 1074.00 1264.52 1131 1131 384 57 59 41 1473 1524 482 148 152 68 0 -0.303
13 0.183 1.19 1.828e-01 2401.00 2018.46 2458 2467 459 57 60 41 2274 2276 435 159 162 69 0 0.183
14 -0.336 0.83 8.331e-01 1637.00 1971.70 1694 1688 310 57 59 42 2224 2182 474 158 160 68 0 -0.336
15 0.110 1.13 2.618e-01 2068.00 1828.55 2124 2119 505 56 59 43 2074 2049 507 158 162 69 0 0.110
16 -0.033 1.02 4.504e-01 3058.00 2986.18 3117 3106 635 59 61 43 3278 3250 551 149 153 67 0 -0.033
17 -0.218 0.90 7.062e-01 1696.00 1881.99 1753 1772 324 57 60 42 2129 2066 489 157 161 68 0 -0.218
18 -0.466 0.76 9.224e-01 1368.00 1803.73 1424 1413 351 56 60 43 2048 2036 398 158 163 70 0 -0.466
19 1.05 4.797e-01 10.00 9.54 56 58 41 55 59 43 170 172 68 167 170 71 -50 -1.585
20 -0.992 0.53 9.990e-01 874.00 1658.67 929 931 238 55 58 42 1895 1889 390 157 161 69 0 -0.992

Total number of rows: 25246

Table truncated, full table size 2340 Kbytes.




Supplementary file Size Download File type/resource
GSM359314.gpr.gz 2.4 Mb (ftp)(http) GPR
Processed data included within Sample table

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