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Sample GSM359291 Query DataSets for GSM359291
Status Public on Dec 01, 2009
Title H3K27me3 Yaswen2A RenLab ENCODE PCR tiling array replicate 1 llee_enc_H3K27me3_Yaswen2A_031108.gpr
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from Yaswen2A cells using H3K27me3 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from Yaswen2A cells using H3K27me3 antibody
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from Yaswen2A cells
Organism Homo sapiens
Characteristics Input DNA from Yaswen2A cells
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol GenePix
Scan protocol GenePix
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Jan 09, 2009
Last update date Feb 19, 2009
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE14436 P16INK4a mediated supperssion of telomerase in normal and malignant human breast cells

Data table header descriptions
ID_REF ID_REF
VALUE log2 ratio (F635/F532) with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -0.386 0.90 7.396e-01 450.00 498.18 512 583 386 62 70 54 711 806 465 123 127 60 0 -0.386
2 -0.329 0.94 6.617e-01 476.00 506.65 538 596 330 62 68 51 719 809 409 121 126 58 0 -0.329
3 1.18 4.942e-01 10.00 8.47 62 87 199 62 68 52 129 233 1406 122 127 59 -50 0
4 1.18 4.007e-01 10.00 8.47 62 71 54 63 69 52 124 126 59 122 125 59 -50 0
5 -0.449 0.86 8.377e-01 673.00 778.62 733 828 461 60 67 51 1041 1172 576 122 124 59 0 -0.449
6 -0.423 0.88 8.343e-01 1077.00 1223.42 1138 1132 378 61 68 52 1565 1551 354 121 124 60 0 -0.423
7 -0.579 0.79 9.506e-01 678.00 858.26 741 808 428 63 69 52 1133 1143 492 120 124 60 0 -0.579
8 -0.402 0.89 8.001e-01 813.00 909.94 873 862 338 60 67 52 1193 1205 359 119 122 59 0 -0.402
9 -0.540 0.81 9.375e-01 648.00 798.10 707 709 311 59 66 51 1061 1052 325 119 123 57 0 -0.540
10 -0.287 0.97 5.975e-01 987.00 1020.08 1049 1060 413 62 68 51 1325 1346 404 121 126 58 0 -0.287
11 -0.465 0.85 8.631e-01 331.00 387.19 391 433 207 60 68 54 578 591 241 121 125 58 0 -0.465
12 -0.335 0.94 6.585e-01 306.00 327.04 365 415 271 59 66 50 503 615 340 117 122 58 0 -0.335
13 -0.278 0.97 5.782e-01 466.00 478.69 524 529 230 58 65 51 686 683 223 121 125 56 0 -0.278
14 -0.437 0.87 8.476e-01 617.00 707.45 675 685 253 58 65 51 954 949 258 119 125 58 0 -0.437
15 -0.318 0.95 6.553e-01 519.00 548.17 577 558 251 58 66 52 769 766 274 122 126 59 0 -0.318
16 -0.240 1.00 5.011e-01 913.00 913.33 973 980 308 60 66 51 1202 1229 253 124 127 57 0 -0.240
17 -0.263 0.98 5.491e-01 490.00 498.18 547 560 213 57 65 51 710 698 204 122 125 58 0 -0.263
18 -0.454 0.86 8.576e-01 622.00 721.85 679 700 317 57 66 52 974 993 402 122 126 58 0 -0.454
19 1.18 4.017e-01 10.00 8.47 63 69 53 60 66 51 124 127 61 128 131 59 -50 0
20 0.403 1.56 7.820e-04 779.00 499.03 839 840 349 60 66 51 716 703 239 127 130 59 0 0.403

Total number of rows: 25246

Table truncated, full table size 2324 Kbytes.




Supplementary file Size Download File type/resource
GSM359291.gpr.gz 2.4 Mb (ftp)(http) GPR
Processed data included within Sample table
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