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Sample GSM355340 Query DataSets for GSM355340
Status Public on Jun 01, 2011
Title Training71-2
Sample type RNA
Source name Pretreatment sample_Training set
Organism Homo sapiens
Characteristics Pretreatment endoscopic biopsy samples collected from CF-treated metastatic gastric cancer patients
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from tumor-rich area using Trizol, according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix G3000 GeneArray Scanner
Description Training set to identify the signature for the intrinsic resistance to CF
This sample uses the same CEL data as GSM355245
Data processing The data were processed with R (v 2.6.1) and BRB-ArrayTools (v 3.6).
Submission date Dec 24, 2008
Last update date Jun 01, 2011
Contact name Jeffrey E Green
Phone 3014355193
Fax 3014968709
Organization name NCI
Street address Rm 4054, 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL571
Series (2)
GSE14209 Dysregulated genes associated with acquired resistance
GSE14210 Expression data from human endoscopic biopsy samples
Alternative to GSM355245

Data table header descriptions

Data table
1007_s_at 10.81325491
1053_at 8.226714943
117_at 6.446484893
121_at 8.247283397
1255_g_at 4.107097075
1294_at 7.722250711
1316_at 5.826533056
1320_at 5.298820787
1405_i_at 7.481688413
1431_at 4.496401088
1438_at 6.829680255
1487_at 9.18821924
1494_f_at 6.377509069
1598_g_at 9.837839033
160020_at 7.80727832
1729_at 8.738657531
177_at 5.532431767
1773_at 5.522135505
179_at 8.732780477
1861_at 6.997399008

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM355340.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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