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Sample GSM355338 Query DataSets for GSM355338
Status Public on Jun 01, 2011
Title Training64-2
Sample type RNA
Source name Pretreatment sample_Training set
Organism Homo sapiens
Characteristics Pretreatment endoscopic biopsy samples collected from CF-treated metastatic gastric cancer patients
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from tumor-rich area using Trizol, according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix G3000 GeneArray Scanner
Description Training set to identify the signature for the intrinsic resistance to CF
This sample uses the same CEL data as GSM355238
Data processing The data were processed with R (v 2.6.1) and BRB-ArrayTools (v 3.6).
Submission date Dec 24, 2008
Last update date Jun 01, 2011
Contact name Jeffrey E Green
Phone 3014355193
Fax 3014968709
Organization name NCI
Street address Rm 4054, 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL571
Series (2)
GSE14209 Dysregulated genes associated with acquired resistance
GSE14210 Expression data from human endoscopic biopsy samples
Alternative to GSM355238

Data table header descriptions

Data table
1007_s_at 11.05666671
1053_at 7.519461967
117_at 7.489716354
121_at 9.187883251
1255_g_at 4.552593785
1294_at 8.384640186
1316_at 6.687749394
1320_at 5.89276083
1405_i_at 7.755952194
1431_at 5.013025634
1438_at 6.793723522
1487_at 8.596272115
1494_f_at 6.545826008
1598_g_at 9.432095249
160020_at 8.731619947
1729_at 8.929729298
177_at 6.099693124
1773_at 6.069136373
179_at 9.29373122
1861_at 7.369074238

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM355338.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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