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Sample GSM355333 Query DataSets for GSM355333
Status Public on Jun 01, 2011
Title Training47-2
Sample type RNA
Source name Pretreatment sample_Training set
Organism Homo sapiens
Characteristics Pretreatment endoscopic biopsy samples collected from CF-treated metastatic gastric cancer patients
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from tumor-rich area using Trizol, according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix G3000 GeneArray Scanner
Description Training set to identify the signature for the intrinsic resistance to CF
This sample uses the same CEL data as GSM355221
Data processing The data were processed with R (v 2.6.1) and BRB-ArrayTools (v 3.6).
Submission date Dec 24, 2008
Last update date Jun 01, 2011
Contact name Jeffrey E Green
Phone 3014355193
Fax 3014968709
Organization name NCI
Street address Rm 4054, 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL571
Series (2)
GSE14209 Dysregulated genes associated with acquired resistance
GSE14210 Expression data from human endoscopic biopsy samples
Alternative to GSM355221

Data table header descriptions

Data table
1007_s_at 11.45171283
1053_at 8.555607401
117_at 7.019121543
121_at 8.348166652
1255_g_at 4.236469578
1294_at 6.750248688
1316_at 6.019684564
1320_at 5.583686324
1405_i_at 8.857260009
1431_at 4.44296797
1438_at 6.537797724
1487_at 8.45193811
1494_f_at 6.527820189
1598_g_at 8.61466884
160020_at 8.549116652
1729_at 8.679508162
177_at 5.455169777
1773_at 6.205072804
179_at 8.678421966
1861_at 6.25522695

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM355333.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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