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Sample GSM355299 Query DataSets for GSM355299
Status Public on Jun 01, 2011
Title AcquiredResistant2
Sample type RNA
Source name Posttreatment sample
Organism Homo sapiens
Characteristics Collected at the progressive disease
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from tumor-rich area using Trizol, according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix G3000 GeneArray Scanner
Description Post-CF
Data processing The data were processed with R (v 2.6.1) and BRB-ArrayTools (v 3.6).
Submission date Dec 24, 2008
Last update date Jun 01, 2011
Contact name Jeffrey E Green
Phone 3014355193
Fax 3014968709
Organization name NCI
Street address Rm 4054, 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL571
Series (2)
GSE14209 Dysregulated genes associated with acquired resistance
GSE14210 Expression data from human endoscopic biopsy samples

Data table header descriptions

Data table
1007_s_at 11.07983941
1053_at 7.203128164
117_at 6.313069765
121_at 8.847767193
1255_g_at 4.144778679
1294_at 7.686771991
1316_at 5.910742648
1320_at 5.930443297
1405_i_at 7.432591413
1431_at 4.526114211
1438_at 6.565981831
1487_at 9.549943451
1494_f_at 6.026985955
1598_g_at 9.347484114
160020_at 8.387924625
1729_at 8.649412132
177_at 7.629152522
1773_at 6.055373723
179_at 8.85904395
1861_at 8.046646976

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM355299.cel.gz 2.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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