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Sample GSM355244 Query DataSets for GSM355244
Status Public on Jun 01, 2011
Title Training70
Sample type RNA
 
Source name Pretreatment sample_Training set
Organism Homo sapiens
Characteristics Pretreatment endoscopic biopsy samples collected from CF-treated metastatic gastric cancer patients
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from tumor-rich area using Trizol, according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
 
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix G3000 GeneArray Scanner
Description Training set to identify the signature for the intrinsic resistance to CF
This sample uses the same CEL data as GSM355339
Data processing The data were processed with R (v 2.6.1) and BRB-ArrayTools (v 3.6).
 
Submission date Dec 24, 2008
Last update date Jun 01, 2011
Contact name Jeffrey E Green
E-mail(s) JEGreen@mail.nih.gov
Phone 3014355193
Fax 3014968709
Organization name NCI
Street address Rm 4054, 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL571
Series (2)
GSE14208 Clinical response of metastatic gastric cancer patients to cisplatin and fluorouracil (CF) combination chemotherapy
GSE14210 Expression data from human endoscopic biopsy samples
Relations
Alternative to GSM355339

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
1007_s_at 9.260640887
1053_at 6.295838085
117_at 5.892064337
121_at 7.678876076
1255_g_at 4.540958819
1294_at 6.643626061
1316_at 6.213765354
1320_at 5.153130529
1405_i_at 6.70310875
1431_at 4.487788164
1438_at 6.25901763
1487_at 8.542265659
1494_f_at 7.039261213
1598_g_at 8.977517609
160020_at 7.364580797
1729_at 6.961013864
177_at 4.430079185
1773_at 5.043620427
179_at 8.01999586
1861_at 5.414367699

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM355244.CEL.gz 2.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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