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Sample GSM355238 Query DataSets for GSM355238
Status Public on Jun 01, 2011
Title Training64
Sample type RNA
Source name Pretreatment sample_Training set
Organism Homo sapiens
Characteristics Pretreatment endoscopic biopsy samples collected from CF-treated metastatic gastric cancer patients
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from tumor-rich area using Trizol, according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix G3000 GeneArray Scanner
Description Training set to identify the signature for the intrinsic resistance to CF
This sample uses the same CEL data as GSM355338
Data processing The data were processed with R (v 2.6.1) and BRB-ArrayTools (v 3.6).
Submission date Dec 24, 2008
Last update date Jun 01, 2011
Contact name Jeffrey E Green
Phone 3014355193
Fax 3014968709
Organization name NCI
Street address Rm 4054, 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL571
Series (2)
GSE14208 Clinical response of metastatic gastric cancer patients to cisplatin and fluorouracil (CF) combination chemotherapy
GSE14210 Expression data from human endoscopic biopsy samples
Alternative to GSM355338

Data table header descriptions

Data table
1007_s_at 10.44915118
1053_at 6.905721746
117_at 6.79924539
121_at 8.576787649
1255_g_at 4.146284413
1294_at 7.646111873
1316_at 5.78431174
1320_at 5.371009624
1405_i_at 7.064847967
1431_at 4.595829605
1438_at 6.074564921
1487_at 7.91306919
1494_f_at 5.945930048
1598_g_at 8.694294638
160020_at 8.241269554
1729_at 8.200709723
177_at 5.435784233
1773_at 5.405633605
179_at 8.540495195
1861_at 6.718840614

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM355238.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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