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Sample GSM3511173 Query DataSets for GSM3511173
Status Public on Dec 14, 2019
Title rat-drug concetration 3.2g/kg-repH8
Sample type RNA
Source name rat-drug concetration 3.2g/kg-kidney
Organism Rattus norvegicus
Characteristics strain: Sprague Dawley
sample group: Mongolian medicine Narenmandula group
treatment: Narenmandula 3.2g/kg
tissue: renal tissues
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Ligation Mix Biotin (Affymetrix)
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 16 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Command Console (AGCC)
Description miRNA expression data from drug group
Data processing The data were preprocessed with R/Bioconductor package Affy ,and the processing algorithm used Range Migration Algorithm (RMA)
Submission date Dec 13, 2018
Last update date Dec 15, 2019
Contact name Xiulan Wang
Organization name Inner Mongolia University For The Nationlities
Department Affiliated Hospital
Street address HuoLinhe
City Tongliao
State/province Inner Mongolia
ZIP/Postal code 028000
Country China
Platform ID GPL19117
Series (1)
GSE123776 microRNA expression profile in renal tissues of rats with doxorubicin nephropathy by Mongolian medicine Narenmandula

Data table header descriptions
VALUE RMA signal intensity

Data table
14q0_st 0.450800112
14qI-1_st 0.732208195
14qI-1_x_st 0.598711894
14qI-2_st 0.505192941
14qI-3_x_st 0.168728613
14qI-4_st 0.42836313
14qI-4_x_st 0.16828554
14qI-5_st 0.320742564
14qI-6_st 0.24119458
14qI-7_st 0.663851513
14qI-8_st 0.17108477
14qI-8_x_st 0.175283985
14qI-9_x_st 0.026685106
14qII-1_st 0.336126244
14qII-1_x_st 0.444825549
14qII-10_st 0.364475471
14qII-11_st 0.60664942
14qII-12_st 0.419712572
14qII-12_x_st 0.275476106
14qII-13_st 0.261476686

Total number of rows: 36353

Table truncated, full table size 984 Kbytes.

Supplementary file Size Download File type/resource
GSM3511173_H8.CEL.gz 714.8 Kb (ftp)(http) CEL
Processed data included within Sample table

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