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Sample GSM3511172 Query DataSets for GSM3511172
Status Public on Dec 14, 2019
Title rat-drug concetration 3.2g/kg-repH4
Sample type RNA
Source name rat-drug concetration 3.2g/kg-kidney
Organism Rattus norvegicus
Characteristics strain: Sprague Dawley
sample group: Mongolian medicine Narenmandula group
treatment: Narenmandula 3.2g/kg
tissue: renal tissues
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Ligation Mix Biotin (Affymetrix)
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 16 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Command Console (AGCC)
Description miRNA expression data from drug group
Data processing The data were preprocessed with R/Bioconductor package Affy ,and the processing algorithm used Range Migration Algorithm (RMA)
Submission date Dec 13, 2018
Last update date Dec 15, 2019
Contact name Xiulan Wang
Organization name Inner Mongolia University For The Nationlities
Department Affiliated Hospital
Street address HuoLinhe
City Tongliao
State/province Inner Mongolia
ZIP/Postal code 028000
Country China
Platform ID GPL19117
Series (1)
GSE123776 microRNA expression profile in renal tissues of rats with doxorubicin nephropathy by Mongolian medicine Narenmandula

Data table header descriptions
VALUE RMA signal intensity

Data table
14q0_st 0.374923972
14qI-1_st 0.949101327
14qI-1_x_st 0.827073759
14qI-2_st 0.269822221
14qI-3_x_st 0.291465742
14qI-4_st 0.340544053
14qI-4_x_st 0.312479419
14qI-5_st 0.245312265
14qI-6_st 0.259163243
14qI-7_st 0.82751127
14qI-8_st 0.212993136
14qI-8_x_st 0.3048631
14qI-9_x_st 0.118330908
14qII-1_st 0.248598935
14qII-1_x_st 0.289826732
14qII-10_st 0.242782641
14qII-11_st 0.075528584
14qII-12_st 0.494140346
14qII-12_x_st 0.38797217
14qII-13_st 0.41990101

Total number of rows: 36353

Table truncated, full table size 984 Kbytes.

Supplementary file Size Download File type/resource
GSM3511172_H4.CEL.gz 721.8 Kb (ftp)(http) CEL
Processed data included within Sample table

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