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Sample GSM3511169 Query DataSets for GSM3511169
Status Public on Dec 14, 2019
Title rat-model group-repF8
Sample type RNA
Source name rat-model group-kidney
Organism Rattus norvegicus
Characteristics strain: Sprague Dawley
sample group: doxorubicin nephropathy model
tissue: renal tissues
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Ligation Mix Biotin (Affymetrix)
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 16 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Command Console (AGCC)
Description miRNA expression data from model group
Data processing The data were preprocessed with R/Bioconductor package Affy ,and the processing algorithm used Range Migration Algorithm (RMA)
Submission date Dec 13, 2018
Last update date Dec 15, 2019
Contact name Xiulan Wang
Organization name Inner Mongolia University For The Nationlities
Department Affiliated Hospital
Street address HuoLinhe
City Tongliao
State/province Inner Mongolia
ZIP/Postal code 028000
Country China
Platform ID GPL19117
Series (1)
GSE123776 microRNA expression profile in renal tissues of rats with doxorubicin nephropathy by Mongolian medicine Narenmandula

Data table header descriptions
VALUE RMA signal intensity

Data table
14q0_st 0.375847801
14qI-1_st 0.259478392
14qI-1_x_st 0.221077267
14qI-2_st 0.360889479
14qI-3_x_st 0.662419625
14qI-4_st 0.254816497
14qI-4_x_st 0.279983321
14qI-5_st 0.193154707
14qI-6_st 0.323987135
14qI-7_st 0.838141109
14qI-8_st 0.100886398
14qI-8_x_st 0.125538752
14qI-9_x_st 0.651949372
14qII-1_st 0.168175839
14qII-1_x_st 0.212436199
14qII-10_st -0.07090149
14qII-11_st 0.387923577
14qII-12_st 0.323534366
14qII-12_x_st 0.262513331
14qII-13_st 0.370794168

Total number of rows: 36353

Table truncated, full table size 984 Kbytes.

Supplementary file Size Download File type/resource
GSM3511169_F8.CEL.gz 741.1 Kb (ftp)(http) CEL
Processed data included within Sample table

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