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Sample GSM3511164 Query DataSets for GSM3511164
Status Public on Dec 14, 2019
Title rat-normal group-repE6
Sample type RNA
Source name rat-normal group-kidney
Organism Rattus norvegicus
Characteristics strain: Sprague Dawley
sample group: normal
tissue: renal tissues
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Ligation Mix Biotin (Affymetrix)
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 16 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Command Console (AGCC)
Description miRNA expression data from normal group
Data processing The data were preprocessed with R/Bioconductor package Affy ,and the processing algorithm used Range Migration Algorithm (RMA)
Submission date Dec 13, 2018
Last update date Dec 15, 2019
Contact name Xiulan Wang
Organization name Inner Mongolia University For The Nationlities
Department Affiliated Hospital
Street address HuoLinhe
City Tongliao
State/province Inner Mongolia
ZIP/Postal code 028000
Country China
Platform ID GPL19117
Series (1)
GSE123776 microRNA expression profile in renal tissues of rats with doxorubicin nephropathy by Mongolian medicine Narenmandula

Data table header descriptions
VALUE RMA signal intensity

Data table
14q0_st 0.278228941
14qI-1_st 0.254415229
14qI-1_x_st 0.404079806
14qI-2_st 0.315264359
14qI-3_x_st 0.425607005
14qI-4_st 0.520405098
14qI-4_x_st 0.612387975
14qI-5_st 0.270552439
14qI-6_st 0.150275053
14qI-7_st 0.839143857
14qI-8_st 0.254415229
14qI-8_x_st 0.254415229
14qI-9_x_st 0.647326319
14qII-1_st 0.248598935
14qII-1_x_st 0.39767951
14qII-10_st -0.017113711
14qII-11_st 0.345289697
14qII-12_st 0.568091428
14qII-12_x_st 0.532354498
14qII-13_st 0.295300159

Total number of rows: 36353

Table truncated, full table size 985 Kbytes.

Supplementary file Size Download File type/resource
GSM3511164_E6.CEL.gz 717.0 Kb (ftp)(http) CEL
Processed data included within Sample table

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