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Sample GSM3511163 Query DataSets for GSM3511163
Status Public on Dec 14, 2019
Title rat-normal group-repE4
Sample type RNA
Source name rat-normal group-kidney
Organism Rattus norvegicus
Characteristics strain: Sprague Dawley
sample group: normal
tissue: renal tissues
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Ligation Mix Biotin (Affymetrix)
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 16 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Command Console (AGCC)
Description miRNA expression data from normal group
Data processing The data were preprocessed with R/Bioconductor package Affy ,and the processing algorithm used Range Migration Algorithm (RMA)
Submission date Dec 13, 2018
Last update date Dec 15, 2019
Contact name Xiulan Wang
Organization name Inner Mongolia University For The Nationlities
Department Affiliated Hospital
Street address HuoLinhe
City Tongliao
State/province Inner Mongolia
ZIP/Postal code 028000
Country China
Platform ID GPL19117
Series (1)
GSE123776 microRNA expression profile in renal tissues of rats with doxorubicin nephropathy by Mongolian medicine Narenmandula

Data table header descriptions
VALUE RMA signal intensity

Data table
14q0_st 0.271197544
14qI-1_st 0.312008129
14qI-1_x_st 0.251994931
14qI-2_st 0.380978599
14qI-3_x_st 0.174710681
14qI-4_st 0.273016943
14qI-4_x_st 0.271021626
14qI-5_st 0.237449454
14qI-6_st 0.6490886
14qI-7_st 1.433836926
14qI-8_st 0.32678047
14qI-8_x_st 0.440241197
14qI-9_x_st -0.096831389
14qII-1_st 0.561594524
14qII-1_x_st 0.506144952
14qII-10_st 0.260472465
14qII-11_st 0.262693204
14qII-12_st 0.753227408
14qII-12_x_st 0.505571824
14qII-13_st 0.193263336

Total number of rows: 36353

Table truncated, full table size 985 Kbytes.

Supplementary file Size Download File type/resource
GSM3511163_E4.CEL.gz 708.1 Kb (ftp)(http) CEL
Processed data included within Sample table

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