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Sample GSM351028 Query DataSets for GSM351028
Status Public on Jan 28, 2009
Title c-Myc IP from partial iPS cells
Sample type genomic
 
Channel 1
Source name partial iPS cells - c-Myc IP
Organism Mus musculus
Characteristics Cultured partial iPS cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and an IP was performed for c-Myc
Label Cy5
Label protocol Labeling done according to manufacturer's protocol
 
Channel 2
Source name partial iPS cells - no IP
Organism Mus musculus
Characteristics Cultured partial iPS cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and no IP was performed
Label Cy3
Label protocol Labeling done according to manufacturer's protocol
 
 
Hybridization protocol Hybridization done according to manufacturer's protocol
Scan protocol Scanning was performed with manufacturer's protocol
Description none
Data processing Data analysis was performed using the Agilent Chip-Analytics software v1.3
 
Submission date Dec 13, 2008
Last update date Jan 28, 2009
Contact name Kathrin Plath
Organization name UCLA
Department Biological Chemistry
Lab BSRB 390B
Street address 615 Charles E. Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095-1737
Country USA
 
Platform ID GPL7793
Series (1)
GSE14012 Role of the reprogramming factors in inducing pluripotency

Data table header descriptions
ID_REF
VALUE Difference between IP/WCE ratio divided by the Agilent error model
AvePX Pvalue of VALUE
Xbaraves Neighboring probe calculation
AvePXbar Pvalue of Xbaraves

Data table
ID_REF VALUE AvePX Xbaraves AvePXbar
1 -0.255508787 0.531272183 -0.265540861 0.603977542
2 -0.094903622 0.488530452 -0.235003511 0.592074352
3 -0.141399535 0.545793253 0.000912547 0.482733975
4 0.215389802 0.412195583 0.006937782 0.495706203
5 -0.027433395 0.506385647 0.087206375 0.450909439
6 0.086087553 0.441552891 -0.087618348 0.517492932
7 -0.169839861 0.567722303 -0.056470617 0.51400466
8 0.257083643 0.370757211 0.140376329 0.439046388
9 0.087357317 0.459843138 0.123835379 0.442447988
10 -0.002641808 0.499697464 -0.406941742 0.656385473
11 -0.946881042 0.829777497 -0.896019771 0.812374432
12 -0.992759087 0.842543856 -1.083878104 0.861674796
13 -0.442786779 0.662632255 -0.716906847 0.760159433
14 -0.15611502 0.555171615 -0.368936319 0.639928478
15 -0.217225257 0.586344295 -0.435904593 0.667732617
16 -0.558052343 0.707467348 -0.372082017 0.631817091
17 0.022571906 0.477987674 -0.121894121 0.535249336
18 0.340252091 0.363645239 0.822392107 0.200655954
19 1.47349254 0.054079093 1.330437758 0.089008258
20 1.203190359 0.076628693 1.481451418 0.067130527

Total number of rows: 473374

Table truncated, full table size 25629 Kbytes.




Supplementary file Size Download File type/resource
GSM351028_cMyc-piPS1.tsv.gz 55.1 Mb (ftp)(http) TSV
GSM351028_cMyc-piPS2.tsv.gz 47.7 Mb (ftp)(http) TSV
Processed data included within Sample table

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