NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM350576 Query DataSets for GSM350576
Status Public on Jan 28, 2009
Title c-Myc IP from ES cells
Sample type genomic
 
Channel 1
Source name ES cells - c-Myc IP
Organism Mus musculus
Characteristics Cultured ES cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and an IP was performed for c-Myc
Label Cy5
Label protocol Labeling done according to manufacturer's protocol
 
Channel 2
Source name ES cells - no IP
Organism Mus musculus
Characteristics Cultured ES cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and no IP was performed
Label Cy3
Label protocol Labeling done according to manufacturer's protocol
 
 
Hybridization protocol Hybridization done according to manufacturer's protocol
Scan protocol Scanning was performed with manufacturer's protocol
Description none
Data processing Data analysis was performed using the Agilent Chip-Analytics software v1.3
 
Submission date Dec 11, 2008
Last update date Jan 28, 2009
Contact name Kathrin Plath
Organization name UCLA
Department Biological Chemistry
Lab BSRB 390B
Street address 615 Charles E. Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095-1737
Country USA
 
Platform ID GPL7777
Series (1)
GSE14012 Role of the reprogramming factors in inducing pluripotency

Data table header descriptions
ID_REF
VALUE Difference between IP and WCE divided by the Agilent error model
AvePX Probability of the VALUE
Xbaraves Neighborhood Xbar calculation
AvePXbar Probability of the PXbar

Data table
ID_REF VALUE AvePX Xbaraves AvePXbar
1 -0.031089873 0.516158622 -0.190072968 0.607833307
2 -0.265358373 0.706167653 -0.252062326 0.568016113
3 -0.281087593 0.330774631 -0.295870838 0.553560193
4 -0.135638927 0.516620692 -0.268206912 0.505491771
5 -0.200417398 0.645495237 -0.248292115 0.651732909
6 -0.23008545 0.680166373 -0.191399051 0.665055322
7 0.000987725 0.515184698 -0.105078872 0.601916747
8 -0.254751245 0.648213691 -0.148455244 0.604756097
9 -0.077996626 0.580503148 -0.046547078 0.50640311
10 0.24390497 0.268985716 0.03500613 0.469169263
11 -0.060866859 0.550723592 -0.12927282 0.582154933
12 -0.466788688 0.807742885 -0.189860834 0.649593271
13 0.103826145 0.46252776 -0.297586111 0.730112124
14 -0.316917335 0.692885438 -0.08058276 0.598150074
15 0.047174031 0.506393812 -0.206406087 0.661620228
16 -0.195591167 0.642706902 -0.030371723 0.562524654
17 0.100577846 0.452752618 0.041808598 0.505967039
18 0.217714042 0.375715594 0.098645795 0.40870588
19 -0.063413865 0.403683143 0.087852004 0.43735486
20 0.075734796 0.498212595 0.107821279 0.428245995

Total number of rows: 472607

Table truncated, full table size 25607 Kbytes.




Supplementary file Size Download File type/resource
GSM350576_cMyc-ES1.tsv.gz 55.2 Mb (ftp)(http) TSV
GSM350576_cMyc-ES2.tsv.gz 55.8 Mb (ftp)(http) TSV
GSM350576_cMyc-ES3.tsv.gz 55.1 Mb (ftp)(http) TSV
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap