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Sample GSM3438204 Query DataSets for GSM3438204
Status Public on Apr 25, 2019
Title ovarian secondary follicles_9 weeks old mouse, biological rep1
Sample type RNA
 
Source name ovarian secondary follicles (9 weeks old mouse)
Organism Mus musculus
Characteristics tissue: ovarian secondary follicles
strain: C57BL/6J
age: 9 weeks old
Growth protocol The 9 weeks old and 32 weeks old, specific pathogen-free (SPF), female C57BL/6J mice were obtained from Beijing Vital River Laboratory Animal Technology Co., Ltd. (Beijing, PR China)
Extracted molecule total RNA
Extraction protocol RNAiso plus reagent extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol (GeneChip Expression Analysis Technical Manual, Affymetrix).
 
Hybridization protocol Following fragmentation, cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Command Console Software.
Description Gene expression data from ovarian secondary follicles extracted from 9 weeks old mouse
Data processing The raw data from microarray analysis was normalized using robust multi-array average (RMA) algorithm.
 
Submission date Oct 18, 2018
Last update date Apr 25, 2019
Contact name Shixuan Wang
E-mail(s) shixuanwang@tjh.tjmu.edu.cn
Phone +86-13995553319
Organization name Huazhong University of Science and Technology
Street address No.1095 Jie Fang Avenue
City Wuhan
State/province Hubei
ZIP/Postal code 430030
Country China
 
Platform ID GPL1261
Series (1)
GSE121493 Expression data from young and old mouse ovarian secondary follicles

Data table header descriptions
ID_REF
VALUE RMA signal intensity
ABS_CALL

Data table
ID_REF VALUE ABS_CALL
1415670_at 718.3791 P
1415671_at 483.4825 P
1415672_at 1696.3759 P
1415673_at 118.7192 P
1415674_a_at 320.1769 P
1415675_at 373.8164 P
1415676_a_at 1235.7446 P
1415677_at 231.9666 P
1415678_at 630.6562 P
1415679_at 1705.7316 P
1415680_at 566.1254 P
1415681_at 533.5481 P
1415682_at 261.5350 P
1415683_at 1219.9981 P
1415684_at 635.5312 P
1415685_at 257.6683 P
1415686_at 469.1849 P
1415687_a_at 1315.8080 P
1415688_at 1777.2966 P
1415689_s_at 556.9510 P

Total number of rows: 45101

Table truncated, full table size 946 Kbytes.




Supplementary file Size Download File type/resource
GSM3438204_140527-131051D_Young-1_Mouse430_2_.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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