|
| Status |
Public on Aug 10, 2021 |
| Title |
ETB_55 |
| Sample type |
SRA |
| |
|
| Source name |
placenta
|
| Organism |
Homo sapiens |
| Characteristics |
condition: elective term birth (caesarean section)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA isolation from frozen placenta specimens by using Qiagen Rneasy Micro Kit
Illumina Truseq stranded mRNA
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
sequencing was done in 1 lane
|
| Data processing |
The base calling was done using bcl2fastq (v. 1.8.4)
Read alignment was done using TopHat version 2.0.10 to hg19 human genome reference
Genewise read counts were calculated using HTSeq2
Genome_build: Human hg19
Supplementary_files_format_and_content: files are tab delimited text files containing the genewise read counts for each sample
|
| |
|
| Submission date |
Sep 25, 2018 |
| Last update date |
Aug 10, 2021 |
| Contact name |
Antti Haapalainen |
| E-mail(s) |
antti.haapalainen@oulu.fi
|
| Organization name |
University of Oulu
|
| Department |
CRC
|
| Lab |
Pediatrics
|
| Street address |
Aapistie 5A
|
| City |
Oulu |
| ZIP/Postal code |
90220 |
| Country |
Finland |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE120480 |
Biochemistry of spontaneous preterm birth |
|
| Relations |
| BioSample |
SAMN10129808 |
| SRA |
SRX4739600 |
