|
Status |
Public on Aug 10, 2021 |
Title |
ETB_55 |
Sample type |
SRA |
|
|
Source name |
placenta
|
Organism |
Homo sapiens |
Characteristics |
condition: elective term birth (caesarean section)
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA isolation from frozen placenta specimens by using Qiagen Rneasy Micro Kit Illumina Truseq stranded mRNA
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
|
|
Description |
sequencing was done in 1 lane
|
Data processing |
The base calling was done using bcl2fastq (v. 1.8.4) Read alignment was done using TopHat version 2.0.10 to hg19 human genome reference Genewise read counts were calculated using HTSeq2 Genome_build: Human hg19 Supplementary_files_format_and_content: files are tab delimited text files containing the genewise read counts for each sample
|
|
|
Submission date |
Sep 25, 2018 |
Last update date |
Aug 10, 2021 |
Contact name |
Antti Haapalainen |
E-mail(s) |
antti.haapalainen@oulu.fi
|
Organization name |
University of Oulu
|
Department |
CRC
|
Lab |
Pediatrics
|
Street address |
Aapistie 5A
|
City |
Oulu |
ZIP/Postal code |
90220 |
Country |
Finland |
|
|
Platform ID |
GPL16791 |
Series (1) |
GSE120480 |
Biochemistry of spontaneous preterm birth |
|
Relations |
BioSample |
SAMN10129808 |
SRA |
SRX4739600 |