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Sample GSM3387222 Query DataSets for GSM3387222
Status Public on Sep 14, 2018
Title HD T Cell, activated, techn. rep2
Sample type RNA
Source name Healthy Donor CD8+ T Cell, 6 hrs activated
Organism Homo sapiens
Characteristics disease state: healthy
Treatment protocol Cells were treated with anti-CD3 and anti-CD46 for 6 h
Extracted molecule total RNA
Extraction protocol Genomic DNA and RNA was isolated using Qiagen Allprep. 5pg total RNA was amplified using NuGen Ovation Pico WTA System V2
Label biotin
Label protocol cDNA was labelled usin NuGen Encore Biotin IL kits
Hybridization protocol Illumina HT12.v4 arrays were hybridized using standard Illumina protocols at 48 C
Scan protocol Standard Illumina scanning
Description 9704028013_L
Data processing data was quantile normalized within Illumina Genome Studio
Submission date Sep 13, 2018
Last update date Sep 14, 2018
Contact name Mehdi Pirooznia
Phone 410-340-6052
Organization name National Institutes of Health
Street address 12 SOUTH DR
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL10558
Series (2)
GSE119913 Gene expression in T cells from CD46-deficient patients and matcherd healthy controls
GSE119919 Analysis of transcriptomes of healthy donor and CD46 deficient CD8 T cells

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 87.99928 0.8168831
ILMN_2055271 1873.874 0
ILMN_1736007 93.96246 0.4233766
ILMN_2383229 95.66882 0.3207792
ILMN_1806310 100.5568 0.1493506
ILMN_1779670 92.72147 0.4831169
ILMN_1653355 85.19279 0.9311689
ILMN_1717783 86.24644 0.8974026
ILMN_1705025 100.6489 0.1480519
ILMN_1814316 88.61668 0.7818182
ILMN_2359168 97.34597 0.2441558
ILMN_1731507 86.68559 0.8792208
ILMN_1787689 96.45845 0.2844156
ILMN_3241953 99.03 0.1961039
ILMN_1745607 90.46156 0.6545454
ILMN_2136495 135.1806 0.007792208
ILMN_1668111 84.74568 0.9454545
ILMN_2295559 90.69455 0.6376624
ILMN_1735045 95.80209 0.3168831
ILMN_1680754 117.9464 0.02077922

Total number of rows: 47312

Table truncated, full table size 1437 Kbytes.

Supplementary file Size Download File type/resource
GSM3387222_9704028013_L_Grn.idat.gz 1.6 Mb (ftp)(http) IDAT
Processed data included within Sample table

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