GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM3387221 Query DataSets for GSM3387221
Status Public on Sep 14, 2018
Title HD T Cell, activated, techn. rep1
Sample type RNA
Source name Healthy Donor CD8+ T Cell, 6 hrs activated
Organism Homo sapiens
Characteristics disease state: healthy
Treatment protocol Cells were treated with anti-CD3 and anti-CD46 for 6 h
Extracted molecule total RNA
Extraction protocol Genomic DNA and RNA was isolated using Qiagen Allprep. 5pg total RNA was amplified using NuGen Ovation Pico WTA System V2
Label biotin
Label protocol cDNA was labelled usin NuGen Encore Biotin IL kits
Hybridization protocol Illumina HT12.v4 arrays were hybridized using standard Illumina protocols at 48 C
Scan protocol Standard Illumina scanning
Description 9704028013_D
Data processing data was quantile normalized within Illumina Genome Studio
Submission date Sep 13, 2018
Last update date Sep 14, 2018
Contact name Mehdi Pirooznia
Phone 410-340-6052
Organization name National Institutes of Health
Street address 12 SOUTH DR
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL10558
Series (2)
GSE119913 Gene expression in T cells from CD46-deficient patients and matcherd healthy controls
GSE119919 Analysis of transcriptomes of healthy donor and CD46 deficient CD8 T cells

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 93.95073 0.4168831
ILMN_2055271 1906.053 0
ILMN_1736007 93.55581 0.4428571
ILMN_2383229 93.43741 0.448052
ILMN_1806310 93.14265 0.4623377
ILMN_1779670 88.4547 0.8038961
ILMN_1653355 89.75156 0.7207792
ILMN_1717783 91.40829 0.6038961
ILMN_1705025 88.99448 0.7675325
ILMN_1814316 86.56961 0.8987013
ILMN_2359168 87.65344 0.8532467
ILMN_1731507 93.99586 0.4155844
ILMN_1787689 98.439 0.2012987
ILMN_3241953 99.38118 0.1714286
ILMN_1745607 92.49519 0.5246753
ILMN_2136495 96.14504 0.2961039
ILMN_1668111 97.98638 0.2142857
ILMN_2295559 101.5865 0.1207792
ILMN_1735045 95.27595 0.3350649
ILMN_1680754 110.829 0.04025974

Total number of rows: 47312

Table truncated, full table size 1448 Kbytes.

Supplementary file Size Download File type/resource
GSM3387221_9704028013_D_Grn.idat.gz 1.6 Mb (ftp)(http) IDAT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap