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Sample GSM337755 Query DataSets for GSM337755
Status Public on Jan 01, 2009
Title primary mouth pmo-2
Sample type RNA
Source name primary mouth tissue dissected st.26
Organism Xenopus laevis
Characteristics Xenopus laevis st. 26
Biomaterial provider Sive lab
Treatment protocol tissues were dissected in 0.1XMBS and immediately placed into Trizol and stored at -80C until extraction.
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Trizol (Invitrogen) extraction of total RNA was performed according to the manufacturer's instructions, and total RNA obtained by Trizol extraction was further purified using Lithium chloride solution (Ambion) ppt following manufacturer's protocol.
Label biotin
Label protocol Standard Affymetrix protocol
Hybridization protocol Standard Affymetrix hybridization (small sample)
Scan protocol Standard Affymetrix scan protocol
Description primary mouth tissue dissected st.26
Data processing Standard Affymetrix normalization method (MAS5)
Submission date Oct 28, 2008
Last update date Oct 31, 2008
Contact name Amanda Jane Graham Dickinson
Organization name Whitehead Institute
Lab Hazel Sive
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02108
Country USA
Platform ID GPL1318
Series (1)
GSE13377 Enriched genes in the primary mouth of Xenopus laevis

Data table header descriptions

Data table
AFFX-BioB-5_at 227.088 P 0.000753643
AFFX-BioB-M_at 279.559 P 0.000389797
AFFX-BioB-3_at 178.127 P 4.42873e-05
AFFX-BioC-5_at 541.126 P 4.42873e-05
AFFX-BioC-3_at 458.227 P 4.42873e-05
AFFX-BioDn-5_at 1008.61 P 4.42873e-05
AFFX-BioDn-3_at 1296.2 P 6.02111e-05
AFFX-CreX-5_at 5670.35 P 4.42873e-05
AFFX-CreX-3_at 6258.85 P 4.42873e-05
AFFX-DapX-5_at 26.9143 P 0.000195116
AFFX-DapX-M_at 456.882 P 0.000753643
AFFX-DapX-3_at 2319.5 P 4.42873e-05
AFFX-LysX-5_at 11.4742 A 0.165861
AFFX-LysX-M_at 98.0633 P 0.00401721
AFFX-LysX-3_at 353.394 P 6.02111e-05
AFFX-PheX-5_at 22.5799 P 0.0284573
AFFX-PheX-M_at 82.372 P 0.000753643
AFFX-PheX-3_at 548.985 P 5.16732e-05
AFFX-ThrX-5_at 5.60537 A 0.724854
AFFX-ThrX-M_at 78.7093 P 0.00141043

Total number of rows: 15611

Table truncated, full table size 565 Kbytes.

Supplementary file Size Download File type/resource
GSM337755.CEL.gz 2.9 Mb (ftp)(http) CEL
GSM337755.CHP.gz 2.5 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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