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Sample GSM337741 Query DataSets for GSM337741
Status Public on Jan 01, 2009
Title primary mouth ad-1
Sample type RNA
 
Source name anterior dorsal tissue dissected st.26
Organism Xenopus laevis
Characteristics Xenopus laevis st. 26
Biomaterial provider Sive lab
Treatment protocol tissues were dissected in 0.1XMBS and immediately placed into Trizol and stored at -80C until extraction.
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Trizol (Invitrogen) extraction of total RNA was performed according to the manufacturer's instructions, and total RNA obtained by Trizol extraction was further purified using Lithium chloride solution (Ambion) ppt following manufacturer's protocol.
Label biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix hybridization (small sample)
Scan protocol Standard Affymetrix scan protocol
Description anterior dorsal tissue dissected st.26
Data processing Standard Affymetrix normalization method (MAS5)
 
Submission date Oct 28, 2008
Last update date Oct 31, 2008
Contact name Amanda Jane Graham Dickinson
E-mail(s) adickinson@wi.mit.edu
Organization name Whitehead Institute
Lab Hazel Sive
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02108
Country USA
 
Platform ID GPL1318
Series (1)
GSE13377 Enriched genes in the primary mouth of Xenopus laevis

Data table header descriptions
ID_REF
VALUE MAS5
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 91.2384 P 0.000445901
AFFX-BioB-M_at 122.269 P 4.42873e-05
AFFX-BioB-3_at 85.4492 P 4.42873e-05
AFFX-BioC-5_at 257.159 P 5.16732e-05
AFFX-BioC-3_at 249.653 P 4.42873e-05
AFFX-BioDn-5_at 565.536 P 4.42873e-05
AFFX-BioDn-3_at 707.311 P 4.42873e-05
AFFX-CreX-5_at 3030.99 P 4.42873e-05
AFFX-CreX-3_at 4600.84 P 4.42873e-05
AFFX-DapX-5_at 26.4669 P 0.000445901
AFFX-DapX-M_at 748.326 P 5.16732e-05
AFFX-DapX-3_at 2572.2 P 4.42873e-05
AFFX-LysX-5_at 16.3016 P 0.00762003
AFFX-LysX-M_at 128.109 P 4.42873e-05
AFFX-LysX-3_at 291.602 P 5.16732e-05
AFFX-PheX-5_at 31.2335 P 0.000509415
AFFX-PheX-M_at 114.712 P 4.42873e-05
AFFX-PheX-3_at 393.734 P 4.42873e-05
AFFX-ThrX-5_at 20.7283 P 0.0284573
AFFX-ThrX-M_at 137.855 P 5.16732e-05

Total number of rows: 15611

Table truncated, full table size 572 Kbytes.




Supplementary file Size Download File type/resource
GSM337741.CEL.gz 3.0 Mb (ftp)(http) CEL
GSM337741.CHP.gz 2.5 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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