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Sample GSM337697 Query DataSets for GSM337697
Status Public on Nov 14, 2008
Title HCC1954BL_GLEYS_C04
Sample type genomic
 
Source name human peripheral blood
Organism Homo sapiens
Characteristics EBV-transformed lymphoblastoid cell line with gain of chromosome 31
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
 
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description GLEYS_p_6.0_Test_GenomeWideEx_6_C04_140778
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
 
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
E-mail(s) chiang@med.unc.edu
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
 
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
ID_REF
VALUE copy number inferred after correction with the 5 closest normals

Data table
ID_REF VALUE
CN_473963 1.085
CN_473964 1.749
CN_473965 1.512
CN_477984 2.457
CN_473981 1.403
CN_473982 0.905
CN_497980 2.553
CN_497981 1.805
CN_513369 0.718
CN_513370 1.761
CN_517762 1.959
CN_517763 1.631
CN_502615 1.757
CN_502613 1.406
CN_502614 1.947
CN_502616 3.024
CN_502842 1.885
CN_502843 2.008
CN_466171 2.252
CN_466172 1.244

Total number of rows: 1851810

Table truncated, full table size 32798 Kbytes.




Supplementary file Size Download File type/resource
GSM337697.CEL.gz 30.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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