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Sample GSM337696 Query DataSets for GSM337696
Status Public on Nov 14, 2008
Title HCC1954BL_GLEYS_B01
Sample type genomic
Source name human peripheral blood
Organism Homo sapiens
Characteristics EBV-transformed lymphoblastoid cell line with gain of chromosome 30
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description GLEYS_p_6.0_Test_GenomeWideEx_6_B01_140728
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 1.267
CN_473964 1.356
CN_473965 0.982
CN_477984 1.321
CN_473981 1.231
CN_473982 1.750
CN_497980 1.895
CN_497981 1.564
CN_513369 1.002
CN_513370 1.856
CN_517762 2.055
CN_517763 1.528
CN_502615 2.388
CN_502613 3.022
CN_502614 3.375
CN_502616 3.555
CN_502842 3.096
CN_502843 2.063
CN_466171 2.135
CN_466172 1.868

Total number of rows: 1851810

Table truncated, full table size 32799 Kbytes.

Supplementary file Size Download File type/resource
GSM337696.CEL.gz 31.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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