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Sample GSM337695 Query DataSets for GSM337695
Status Public on Nov 14, 2008
Title HCC1954_COTES_B07
Sample type genomic
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_B07_292932
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 1.554
CN_473964 1.091
CN_473965 1.245
CN_477984 1.727
CN_473981 1.268
CN_473982 2.434
CN_497980 1.994
CN_497981 1.810
CN_513369 0.984
CN_513370 1.931
CN_517762 1.899
CN_517763 1.599
CN_502615 2.395
CN_502613 2.744
CN_502614 2.971
CN_502616 2.504
CN_502842 2.519
CN_502843 2.337
CN_466171 2.468
CN_466172 2.302

Total number of rows: 1851810

Table truncated, full table size 32805 Kbytes.

Supplementary file Size Download File type/resource
GSM337695.CEL.gz 31.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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